Written for U of M Psych 5063 - Introduction to Functional Magnetic Resonance Imaging
Abstract
We have found that activations in the amygdala, and the
anterior cingulate cortex are correlated with surprising visual, audio and
mixed visual and audio stimuli in our individual participant with one
session. The ventromedial prefrontal
cortex (vmPFC) was not activated, although we expected it to be activated. We cannot generalize this to any other
population with any significant degree of confidence. We used a particular set of options in FSL
tools to achieve this result and this paper will cover how we arrived at the
choices we made.
Introduction
There are six basic emotions: happiness, sadness, anger,
fear, disgust, and surprise. Surprise is
the most understudied of Ekman’s six basic emotions. It is defined as a transient
emotional state experienced/resulting from an unexpected event. It can have any intensity and valence. It is divided into:
“Wonder”- which is
generated when there is something unexpected and/or rare.
“Startle”- which is generated by an unexpected stimulus.
“Startle”- which is generated by an unexpected stimulus.
Surprise is a stimulus that is hard to explain. The more cognitive work is needed to explain
a stimulus, the more intense the surprise reaction is. Early theories indicate it as a basic emotion
with a universally recognized facial expression (from Paul Ekman’s work). Recent theories categorize it as a cognitive
state - the process of making sense of unexpected events. Surprise can be positively or negatively
valenced, as opposed to many emotions which have a definite and particular
direction or valence. However, surprise
is rarely neutral. It tends to be a low
intensity negative if it doesn’t evoke a specific direction.
The theory of surprise
The literature contains two groups of theories on surprise,
probability and error prediction.
Probability
Meyer, Reisenzei, & Schützwohl (Meyer, Reisenzei, &
Schützwohl, 1997), said that surprise is a low probability event or a
disconfirmed expectation.
Error prediction
Alternatively, surprise can be seen as a failure to make
sense of an event (Kahneman & Miller, 1986; Maguire et al., 2011). Available knowledge in long-term memory is used
to resolve surprise, by understanding and integrating the surprising event.
Our Approach
We tended to believe in the probability approach. We thought that investigating surprise might
help with understanding some behavioral implications. Surprise induced attention leads to rapid
learning. We chose to investigate
surprise because it is easier to produce surprise in a class setting, since our
consent form was vague, and we hoped to be given broader acceptance of
surprising behavior as we were more likely to make mistakes.
Problem Statement
Surprising visual, audio and mixed visual and audio stimuli
during a decoy task with unexpected visual, audio, and audiovisual surprising
stimuli will activate specific areas of the brain.
Neurological Response to Surprise
We think that the central nucleus of amygdala, the anterior
cingulate cortex, and the ventromedial prefrontal cortex (vmPFC) are likely to
be activated by surprise.
Physiological Response to Surprise
Many physiological responses to surprise are common in the
literature: skin conductance, and heart rate increase and blood volume, pulse
and pulse transit time decrease. These may
lead to BOLD changes we might be able to see.
Materials and Methods
Participant
We used Alexander J. Bratch as our participant (or subject). He is a member of our class, and a graduate
student in Psychology. He suffers from
tinnitus, which may affect the experimental results. He was selected on his willingness to
participate, experience in staying still, and our knowledge of his likes and
dislikes, etc. Bratch was an ideal
participant for the aforementioned reasons.
Alex is ambidextrous, perhaps brought on by being left-handed in a right
handed world. He also has an unusual
configuration of brain blood vessels.
Main Experiment
We, for the main experiment, have chosen to present 30
surprise pictures, videos and sounds in a random approach within the 200 decoy
stimuli using an event-related design. We have defined a localization procedure
to identify the amygdala, the anterior cingulate cortex, and the ventromedial
prefrontal cortex (vmPFC) in the subject’s brain by presenting emotional
pictures. This is followed by a post
experiment survey of the subject, presenting the surprises once again and
getting a rating by the subject of the emotions associated with the stimulus.
Decoy Task
The dominant activity during the study runs is watching a
large number of stimuli, intended to be boring.
Using an event-related design we presented: 200 stimuli, each for 383
ms:
·
40 auditory-only /ba/ and /ga/ syllables
·
40 visual-only /ba/ and /ga/ syllables
·
40 congruent audiovisual (AV) /ba/ and /ga/
syllables
·
40 McGurk incongruent AV syllables (i.e., visual
/ga/ with auditory /ba/)
·
40 non-McGurk incongruent AV syllables (i.e.,
visual /ba/ with auditory /ga/)
Inter-stimulus interval was jittered with one of 2 s, 4 s, or
6 s.
A single male speaker was used for maximum prediction, and
to remove confounds. A demonstration of
the kind of stimuli was shown to the participant before scanning to establish
his expectation of the decoy material.
Experimental Task
There were thirty surprise stimuli presented during the
decoy tasks in a random (jittered) fashion lasting 0.5 seconds each. There were ten each of audiovisual stimuli, visual
stimuli, and audio stimuli. These were very
unexpected and hard to explain (surprising) compared to the stream of pictures
and audio of the single male speaker, since the participant had no knowledge
that they would be happening, and especially since some stimuli included pictures
of him.



We have 40 * 5 = 200 decoy stimuli with 30 target trials.
These trials were presented with five runs with 3 min 52 seconds each. During the experimental scans, the
participant was instructed to watch and listen carefully to the stimuli as he would
be tested on the experiment after it (which did not happen, just to make him
focus during scans). We only were able
to conduct one session with one subject, so predicting effects of surprise on a
larger population are impossible.
Functional Localization Task
The localization procedure is a set of 50 highly emotional
pictures, with stimulus duration of one second and the interstimulus interval
(ISI) of one second. This gave us fifty two-second-long
trials for localization with the expectation of activating the amygdala, the
anterior cingulate cortex, and the ventromedial prefrontal cortex (vmPFC).


Three Likert scales about each of the thirty experimental stimuli: arousal, valence, and liking
The survey of emotional content of the thirty stimuli asked
the subject to review each stimulus and rate it on a scale of emotional
content. It was presented to the
participant after the scanning session.
Purpose: to co-vary the activation by the responses to these
three scales to rule out their effects, since the emotionality of any stimulus
may mask the impact of surprise alone (cognitive subtraction approach).
The values were scored from 1 to 5 (left to right,
respectively)

You can see the
survey and the stimuli at Surprise Qualtrics
Link. They may not be available
after a short while. We ran some
statistics for the results to see how they are distributed.
Valence
|
Arousal
|
Liking
|
|
Stand. Dev
|
1.1055416
|
1.33166562
|
1.1055416
|
Average (mean)
|
3.33333333
|
2.6
|
3.33333333
|
Data Collection tools:
The fMRI data were collected on November 24, 2015 with the 3T-B
Siemens MAGNETOM Prisma with Tim 4G Technology in Room 131-A at the Center for
Magnetic Resonance Research, University of Minnesota. This 3 Tesla scanner uses Total Imaging
Matrix technology. The Tim matrix
concept allows for whole-body examinations with a field of view of up to 205 cm
without repositioning the patient.
Scans for this experiment
For this session, the participant went through eight scans:
Scan 1 (Structural imaging): A T1-weighted MP-RAGE
(magnetization-prepared rapid acquisition with gradient echo) anatomical scan was
acquired for registration purposes. We
acquired the MP-RAGE structural volume (TR = 2300, TE = 2.93, flip angle = 9°)
with 200 transverse slices, each 1 mm thick and 1mm × 1 mm in-plane resolution,
with a 208 x 226 matrix. The results
from this were labeled SE002.
Scan 2-6 (Main experiment): Five T2*-weighted
gradient-echo-planar imaging (EPI) scans for detecting surprise related effect
in the hemodynamic response to the stimulus.
Each functional run involved the acquisition of 116 EPI volumes
(gradient-echo, TR = 2000, TE = 25, flip angle = 80°), each with 34
transverse slices, 3 mm thick, and a 64 × 64 matrix yielding an in-plane
resolution of 3 mm × 3 mm. A functional run lasted 3 min and 52 s, and the
subject completed 5 functional runs. The
results from this were labeled SE003 though SE007.
Scan 7 (Independent functional localizer): T2*-weighted
EPI scan for identification of Regions of Interest (ROIs). We conducted one T2*-weighted
gradient-echo-planar imaging (EPI) scan for localizing the brain regions
expected to be activated during the functional runs. This scan measured the hemodynamic response
to strong emotional stimuli. The run
involved the acquisition of 75 EPI volumes (gradient-echo, TR = 2000, TE = 25,
flip angle = 80°), each with 34 transverse slices, 3 mm thick, and a
64 × 64 matrix yielding an in-plane resolution of 3 mm × 3 mm. The results from this were labeled SE008. However, the MRI machine was not properly set
up and it scanned an incomplete image of the brain. So, we did nothing with this scan.
Scan 8 (Fieldmap): We performed reversed-phase EPI scans to
account for distortion and motion. The first of these scans was to capture the
magnitude of the magnetic distortion. The second was to capture the phase of the
distortion. Each functional run involved
the acquisition of one volume, each with 34 transverse slices, 3 mm thick, and
a 64 × 64 matrix yielding an in-plane resolution of 3 mm × 3 mm. The results from
these were labeled SE011 and SE012.
Software tools used during the experiment
E-Prime Studio, E-Prime Run Version 2.0 was used to drive
the experimental tasks and log the time and actions during the experiment.
The stimulus rating survey was presented through Qualtrics:
Online Survey Software & Insight Platform.
Preprocessing
We examined the raw data, motion correction, slice timing
correction, distortion correction, spatial smoothing, and spatial normalization
(which isn't necessary for just one participant, but was helpful so we could
better label active regions).
Data Analysis Tools
We used FSL from the University of Oxford to do the
analysis.
Brain Extraction
First, we needed to adjust the anatomical scan to extract
the brain from the rest of the anatomy (brain extraction). We used FSL’s BET tool to do this. We used the echo times from the mag and phase
headers. For our example, echo time 1
was 5.76, and echo time 2 was 8.22. The
difference was 8.22-5.76=2.46 and echo spacing was 0.49 from the scanner. We ran Fsl_prepare_fieldmap, using
fieldmap.radpersec.nii.gz and then BET.
Motion correction, slice timing correction, distortion correction, spatial smoothing, and spatial normalization
Our functional scan output (five experimental runs and the functional
localizer) each needed several kinds of correction to get the data ready for
analysis.
First, we needed to run MCFLIRT motion correction (Motion
Correction in FMRIB's Linear Image Registration Tool) to identify and adjust
the data to align structures after head motion between volumes.
Second, we looked at slice timing correction. Our instructor told us we did not need to
correct for any differences due to the timing of the scans taking slices
because the 3T scanners do a good job of capturing the images in two seconds,
and thus the inter-slice motion is not very much. Also, the Siemens machine does the slice
acquisition in a pattern not supported by the native slice timing correction in
FSL. Thus, we made no slice timing
corrections.
Third, we needed to adjust for the magnetic field distortion
in the scanner. This is called B0
Unwrapping in the Feat tool, and takes the images, magnitude and phase, we
captured for distortion correction (labeled SE011 and SE012). It also takes the effective EPI echo spacing
(28 ms, in our case) and EPI TE (2.46 ms, in our case). We also had to use an unwrap direction of -y. The FSL tool for distortion correction
introduced an artifact, and because of this, we dropped it.
Fourth, we did spatial smoothing to reduce the likelihood of
false positives. Due to the nature of
our 3 mm dimensions, we chose 5 mm smoothing, to bring in all surrounding
voxels.
Fifth, we did spatial normalization to MNI using a 2MM image.
Sixth, we set high bandpass 90 ms cut-off and BET brain
extraction on the fMRI data (as we did on the structural image above) to
further localize the data and remove artifacts of respiration, etc.
We also used Boundary-Based Registration (BBR) to register
the fMRI images to the structural images.
And, we used Normal Search because all of our images are in the same
orientation.
Seventh, we used FILM prewhitening and the full model setup. FILM (FMRIB's Improved Linear Model) in a
robust and accurate nonparametric estimation of time series autocorrelation to
prewhiten each voxel's time series; we did this for improved estimation
efficiency compared with methods that do not pre-whiten. We used the Gamma convolution setting.
Eighth, we used a Z threshold of 2.3 and a Cluster P
threshold of 0.05. The default is better
than .05, which is too liberal. We used
actual z min/max and transparent blobs for rendering. Time series plots were
created as well.
Feat
We used the FSL tool Feat, giving it the parameters, and
letting it do this set of steps.
We ran the following first-level analyses:
●
Run1: input to the run 1 functional scan
(SE003), and contrast run1decoy with run1surp txt files in the design, and the
structural scan to co-register
●
Run2: input to the run 2 functional scan
(SE004), and contrast run2decoy with run2surp txt files in the design, and the
structural scan to co-register
●
Run3 input to the run 3 functional scan (SE005),
and contrast run3decoy with run3surp txt files in the design, and the structural
scan to co-register
●
Run4 :input to the run 4 functional scan
(SE006), and contrast run4decoy with run4surp txt files in the design, and the
structural scan to co-register
●
Run5: input to the run 5 functional scan
(SE007), and contrast run5decoy with run5surp txt files in the design, and the
structural scan to co-register
High-level Analysis
We fed the five outputs from the low-level analysis into a
high level analysis to contrast the decoy tasks with the surprising stimuli. We did not separate out the audio vs. the
visual vs. the audio-video stimuli.
We used the default settings in FSL for Post-Stats.
We set up contrasts for each condition in each run:
EV1 value 1 and EV2 value 0
(beta-weight for EV1, the surprises) – giving cope1.
EV1 value 0 and EV2 value 1 (beta-weight for EV2, the decoys) – giving cope2.
EV1 value 1 and EV2 value -1 (EV1 > EV2, the surprise effect) – giving cope3.
EV1 value -1 and EV2 value 1 (EV2 > EV1, the decoy effect) – giving cope4.
EV1 value 0 and EV2 value 1 (beta-weight for EV2, the decoys) – giving cope2.
EV1 value 1 and EV2 value -1 (EV1 > EV2, the surprise effect) – giving cope3.
EV1 value -1 and EV2 value 1 (EV2 > EV1, the decoy effect) – giving cope4.
Likert Scales
We decided not to run any analysis based on the Likert
scales looking at the range of values and the standard deviation of those
values.
Results
We anticipated greater
activity during the surprise task in the amygdala, anterior cingulate cortex,
and ventromedial prefrontal cortex.
Activated areas
We found activation in the amygdala that was very
intense. The anterior cingulate cortex was activated but with less intensity. And, the ventromedial prefrontal cortex was
not activated significantly. The cope3
contrast (Surprise – Decoy) shows these activations:

Discussion
FMRI analysis is a fragile science, in my view, because it
is based on very small changes in large systems that are monitored and reported
in a complex process that is error prone.
In general, there are many wrong ways to analyze and set of fMRI data,
and few right ways. Generally missing
from our class were methods for identifying analysis errors.
Activation areas
We do not know why we did not quite find what we expected. With our limited data set, we don’t have
sufficient data to take it much further. To speculate, we could believe that
the vmPFC was not activated because the emotions evoked were not strong enough
or long-lasting enough to require invoking control from the vmPFC.
We anticipated seeing some impact of the physiological
responses to surprise in the BOLD response, but we did not notice any effect of
the physiological changes.
Looking through the rendered data for the 5 runs, run 4
seems to have much more activation than run 2 or 3 and runs1 and 5 show very
little activation.
We made errors in the process of collecting the functional
localizer scan, which left us without the functional localizer input to
identify regions of interest, so we performed whole brain analysis, which may
have reduced the accuracy of our results.
As a group, we had a discussion about how to run the
analysis – across all stimulus types or separately for Audio-only, Visual-only
and Audio-Video. The issues were around
how much data we had and how much is needed for significant results based on
degrees of freedom versus the possibility of different results based on those
stimulus types. We decided to go across
all stimulus types, with an option to later compare the stimulus types. We realized this was a violation of the usual
research methodology of doing the smallest grouping first and combining later
if they look similar.
Likert Scales
There are two possible methods of analyzing the relationship
among the subjective ratings, emotionality dimensions, and the activity levels.
1. The effects of subjective ratings and emotionality
dimensions are random
Subjective ratings and emotionality
dimensions treated as co-variates.
2. The effects are fixed (ex. negative stimuli are more
surprising)
Subjective ratings and emotionality
dimensions treated as independent variables
As we said above, there are a sufficient range of values for
each of these ratings, and we don’t think it is useful to analyze the impact of
these ratings on the activation we found.
Future Studies
This study was inadequate to generalize, so more study is
called for to gather more and better data on areas activated by surprise and
potential relationships to emotional valence, long-term memory, short-term
memory and many other possible independent variables and co-variants.
References
Ekman, P. and Friesen, W. 1971 Ekman, P.,
& Friesen, W. (1971).
Constants across
cultures in the face and emotion.
Journal of Personality and Social Psychology, 17(2),
124-129.
Jenkinson, M., Bannister,
P., Brady, J. M. and Smith, S. M. (2002) Jenkinson, M., Bannister, P., Brady,
J. M. and Smith, S. M.
Improved Optimisation for the Robust and Accurate Linear Registration and
Motion Correction of Brain Images
NeuroImage, 17(2), 825-841, 2002.
Kahneman, D., and Miller, D.
T. (1986) Kahneman, D., and Miller, D. T.
Norm theory: Comparing reality to its alternatives.
Psychological Review, 93(2), 136-153.
Meyer, W. U., Reisenzein,
R., and Schützwohl, A. (1997) Meyer, W. U., Reisenzein, R., and Schützwohl, A.
Toward a process analysis of emotions: The case of surprise.
Motivation and Emotion, 21(3),
251-274.
Maguire, R., Maguire, P., and
Kaene, M. T. (2011) Maguire, R., Maguire, P., and Kaene, M. T.
Making sense of surprise: An investigation of the factors influencing
surprise judgements.
Journal of Experimental Psychology:
Learning, Memory, and Cognition, 37(1), 176-186.
Acknowledgments
Thanks to Alexander J. Bratch for being cooperative and
(hopefully!) surprised.
My fellow students on our team, Sara J.M. Arnold, Sori Baek,
Erin Begnel, Sekine Ozturk, and Luodi Yu have been great at cooperating and
teaching me the basics of psychology.
I want to thank Amanda Rueter for help early in the class,
and Brittany Bostrom for her help as well.
Thanks to Dr. Philip Burton for teaching and overseeing.
This research was made possible by the State of Minnesota
and the University of Minnesota funding for the Center for Magnetic Resonance
Research and the Biomedical Science Research Facilities Authority, among others.
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